Design and characterization of bivalent BET inhibitors

Nat Chem Biol. 2016 Dec;12(12):1089-1096. doi: 10.1038/nchembio.2209. Epub 2016 Oct 24.

Abstract

Cellular signaling is often propagated by multivalent interactions. Multivalency creates avidity, allowing stable biophysical recognition. Multivalency is an attractive strategy for achieving potent binding to protein targets, as the affinity of bivalent ligands is often greater than the sum of monovalent affinities. The bromodomain and extraterminal domain (BET) family of transcriptional coactivators features tandem bromodomains through which BET proteins bind acetylated histones and transcription factors. All reported antagonists of the BET protein BRD4 bind in a monovalent fashion. Here we describe, to our knowledge for the first time, a bivalent BET bromodomain inhibitor-MT1-which has unprecedented potency. Biophysical and biochemical studies suggest MT1 is an intramolecular bivalent BRD4 binder that is more than 100-fold more potent, in cellular assays, than the corresponding monovalent antagonist, JQ1. MT1 significantly (P < 0.05) delayed leukemia progression in mice, as compared to JQ1. These data qualify a powerful chemical probe for BET bromodomains and a rationale for further development of multidomain inhibitors of epigenetic reader proteins.

MeSH terms

  • Animals
  • Antineoplastic Agents / administration & dosage
  • Antineoplastic Agents / chemistry
  • Antineoplastic Agents / pharmacology*
  • Apoptosis / drug effects
  • Azepines / administration & dosage
  • Azepines / chemistry
  • Azepines / pharmacology*
  • Cell Cycle Proteins
  • Cell Proliferation / drug effects
  • Crystallography, X-Ray
  • Dose-Response Relationship, Drug
  • Drug Design*
  • Humans
  • Leukemia / drug therapy*
  • Leukemia / pathology
  • Ligands
  • Mice
  • Models, Molecular
  • Molecular Structure
  • Neoplasms, Experimental / drug therapy
  • Neoplasms, Experimental / pathology
  • Nuclear Proteins / antagonists & inhibitors*
  • Nuclear Proteins / metabolism
  • Small Molecule Libraries / chemistry
  • Small Molecule Libraries / pharmacology*
  • Structure-Activity Relationship
  • Transcription Factors / antagonists & inhibitors*
  • Transcription Factors / metabolism
  • Triazoles / administration & dosage
  • Triazoles / chemistry
  • Triazoles / pharmacology*

Substances

  • (+)-JQ1 compound
  • Antineoplastic Agents
  • Azepines
  • BRD4 protein, human
  • Cell Cycle Proteins
  • Ligands
  • Nuclear Proteins
  • Small Molecule Libraries
  • Transcription Factors
  • Triazoles

Associated data

  • PubChem-Substance/318150281
  • PubChem-Substance/318150292
  • PubChem-Substance/318150303
  • PubChem-Substance/318150310
  • PubChem-Substance/318150311
  • PubChem-Substance/318150312
  • PubChem-Substance/318150313
  • PubChem-Substance/318150314
  • PubChem-Substance/318150315
  • PubChem-Substance/318150282
  • PubChem-Substance/318150283
  • PubChem-Substance/318150284
  • PubChem-Substance/318150285
  • PubChem-Substance/318150286
  • PubChem-Substance/318150287
  • PubChem-Substance/318150288
  • PubChem-Substance/318150289
  • PubChem-Substance/318150290
  • PubChem-Substance/318150291
  • PubChem-Substance/318150293
  • PubChem-Substance/318150294
  • PubChem-Substance/318150295
  • PubChem-Substance/318150296
  • PubChem-Substance/318150297
  • PubChem-Substance/318150298
  • PubChem-Substance/318150299
  • PubChem-Substance/318150300
  • PubChem-Substance/318150301
  • PubChem-Substance/318150302
  • PubChem-Substance/318150304
  • PubChem-Substance/318150305
  • PubChem-Substance/318150306
  • PubChem-Substance/318150307
  • PubChem-Substance/318150308
  • PubChem-Substance/318150309